scRNA-seq Network Inference Benchmarking
Benchmarking gene regulatory network inference methods on bulk and single-cell RNA-seq data.
Projects
Featured bioinformatics projects.
MERLIN+P+TFA
Improving gene regulatory network inference by integrating priors with transcription factor activity in bulk and single-cell data.
Cell–Cell Network Inference
Learning cell–cell graphs using probabilistic graphical models to improve lineage reconstruction and trajectory inference in single-cell RNA-seq data.
Non-canonical Autophagy in Maize
Multi-omic network analysis reveals compensatory autophagy programs in maize.
Conversion of Rods to Red-green Cones
Dissecting rod-to-cone fate reprogramming in human retinal organoids using single-cell transcriptomics and gene regulatory network analysis.
Human Hindbrain Development
Single-cell time course of hindbrain differentiation to map lineages and identify stage-specific gene regulatory networks.